HPC Cluster Infrastructure Design Important Charactertics

1) When we are going to build the HPC Cluster we have to focus.
a)Flops
b)Budget
c)Application.
Depends on the criteria we have to build the HPC Cluster Data center.
2) Performance should calculate like
a)Performance per $
b)Performance per speed
c)Performance per watt
3)NVIDIA GPU is used in the following criteria
1)Bioinformatics
2)Computational Finance
3)Computational Fluid Dynamics (CFD)
4)Electronic Design Automation.
5)Molecular Dynamics
6)Medical Imaging
7)Quantum Chemistry
8)Whether Climate
9)Match MATLAB.
4)HPC Important Application Name
1)Amber
2)Gromacs (molecular dynamic simulation)
3)Gaussian,
4)matlab,
5)OpenFoAM - Fluid Dynamic
6)NAMD,
7)LAMMPS,
AMBER 11 is the Biochemist -(Molecular Dynamics Research) HPC software. it is Bio molecular simulation package. HPC List of Software.
http://www.hpc.cam.ac.uk/user/software.html

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